Get and set database in msgfPar objects
These functions allow you to retrieve and set the location of the database fasta file in the msgfPar object of interest
db(object) db(object) <- value ## S4 method for signature 'msgfPar' db(object) ## S4 replacement method for signature 'msgfPar,character' db(object) <- value
object |
An msgfPar object |
value |
A string matching the location of a fasta file |
In case of the getter a character vector with the location of the database file
msgfPar: Get the database location
object = msgfPar,value = character: Set the database location
Other msgfPar-getter_setter: chargeRange,
enzyme, fragmentation,
instrument, isotopeError,
lengthRange, matches,
mods, ntt,
protocol, tda,
tolerance
parameters <- msgfPar() db(parameters) <- system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta') db(parameters)
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