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msgfParFragmentation-class

A class handling Fragmentation types


Description

This class defines a fragmentation type and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParFragmentation'
show(object)

## S4 method for signature 'msgfParFragmentation'
length(x)

## S4 method for signature 'msgfParFragmentation'
getMSGFpar(object)

msgfParFragmentation(method)

Arguments

object

An msgfParFragmentation object

x

An msgfParFragmentation object

method

An integer specifying the method

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParFragmentation() An msgfParFragmentation object.

Methods (by generic)

  • show: Short summary of msgfParFragmentation object

  • length: Report the length of an msgfParFragmentation object

  • getMSGFpar: Get system compliant function call

Slots

method

An integer between 0 and 4 giving the selected method

See Also

Examples

fragmentation <- msgfParFragmentation(1)
fragmentation <- msgfParFragmentation('CID')

MSGFplus

An interface between R and MS-GF+

v1.24.0
GPL (>= 2)
Authors
Thomas Lin Pedersen
Initial release
2020-09-01

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