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geneloc

Artificial data for Matrix eQTL sample code: Gene location file.

Description

Artificial Gene location file for 10 genes.

geneid chr left right
Gene_01 chr1 721289 731289
Gene_02 chr1 752565 762565
... ... ... ...

Format

A data frame with 4 columns.

geneid

A column with gene names. The order does not have to match the gene expression data set.

chr

Chromosome number, i.e. chr1.

left

Lower (smaller) coordinate of the gene begining/end.

right

Upper (larger) coordinate of the gene begining/end.

Author(s)

Andrey A Shabalin andrey.shabalin@gmail.com

References

See Also

See Matrix_eQTL_engine for reference and sample code.

MatrixEQTL

Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations

v2.3
LGPL-3
Authors
Andrey A Shabalin [aut, cre] (<https://orcid.org/0000-0003-0309-6821>)
Initial release
2019-12-04

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