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snpsloc

Artificial data for Matrix eQTL sample code: SNP location file.

Description

Artificial SNP location file for 15 markers.

snpid chr pos
Snp_01 chr1 721289
Snp_02 chr1 752565
... ... ...

Format

A data frame with 3 columns.

snpid

A column with SNP names. The order does not have to match the genotype data set.

chr

Chromosome number, i.e. chr1.

pos

Coordinate of the SNP.

Author(s)

Andrey A Shabalin andrey.shabalin@gmail.com

References

See Also

See Matrix_eQTL_engine for reference and sample code.

MatrixEQTL

Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations

v2.3
LGPL-3
Authors
Andrey A Shabalin [aut, cre] (<https://orcid.org/0000-0003-0309-6821>)
Initial release
2019-12-04

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