Mfuzz: top.count – R documentation

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top.count

Determines the number for which each gene has highest membership value in all cluster

Description

This function calculates the number,for which each gene appears to have the top membership score in the partition matrix of clusters produced by mfuzz.

Usage

top.count(cl)

Arguments

`cl`	object of class “flclust”

Value

The function generates a vector containing a count for each gene, which is just the number of times that particular gene has acquired the top membership score.

Author(s)

Lokesh Kumar and Matthias E. Futschik (http://itb.biologie.hu-berlin.de/~futschik)

Examples

if (interactive()){
data(yeast)
# Data pre-processing
yeastF <- filter.NA(yeast)
yeastF <- fill.NA(yeastF)
yeastF <- standardise(yeastF)

# Soft clustering and visualisation
cl <- mfuzz(yeastF,c=20,m=1.25)
top.count(cl)
}

Mfuzz

Soft clustering of time series gene expression data

v2.50.0

GPL-2

Authors

Matthias Futschik <matthias.futschik@sysbiolab.eu>

Initial release

2016-10-18