Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

rel2qtl

Convert data from QTLRel to R/qtl format

Description

Convert the data for a QTL mapping experiment from the QTLRel format to that used by R/qtl (http://www.rqtl.org).

Usage

rel2qtl(gdat, pdat, gmap)

Arguments

gdat

Genotype data
pdat

Phenotype data
gmap

Genetic map

Details

Pedigree information is ignored, and X chromosome data is omitted.

The data are treated as an intercross.

Value

A cross object for the R/qtl package (http://www.rqtl.org).

Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

See Also

Examples

data(miscEx)
f8 <- rel2qtl(gdatF8, pdatF8, gmapF8)
summary(f8)
QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

v1.11
GPL (>= 2)
Authors
Riyan Cheng [aut, cre]
Initial release
2022-6-17

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.