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addCyEdges

Add CyEdges

Description

Add one or more edges to a Cytoscape network by listing source and target node pairs.

Usage

addCyEdges(
  source.target.list,
  edgeType = "interacts with",
  directed = FALSE,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

source.target.list

A list (or list of lists) of source and target node pairs
edgeType

The type of interaction. Default is 'interacts with'.
directed

boolean for whether interactions are directed. Default is FALSE.
network

(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

A list of named lists of SUID, source and target for each edge added.

Examples

addCyEdges(c('sourceNode','targetNode'))
addCyEdges(list(c('s1','t1'),c('s2','t2')))
RCy3

Functions to Access and Control Cytoscape

v2.10.2
MIT + file LICENSE
Authors
Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]
Initial release
2020-11-18

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