RCy3: diffusionBasic – R documentation

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diffusionBasic

Diffusion Basic

Description

Diffusion will send the selected network view and its selected nodes to a web-based REST service to calculate network propagation. Results are returned and represented by columns in the node table.

Usage

diffusionBasic(base.url = .defaultBaseUrl)

Arguments

base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Details

Columns are created for each execution of Diffusion and their names are returned in the response. The nodes you would like to use as input should be selected. This will be used to generate the contents of the diffusion_input column, which represents the query vector and corresponds to h in the diffusion equation.

Value

Version number

Examples

diffusionBasic()

RCy3

Functions to Access and Control Cytoscape

v2.10.2

MIT + file LICENSE

Authors

Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]

Initial release

2020-11-18