RCy3: getLayoutNameMapping – R documentation

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getLayoutNameMapping

Get Layout Name Mapping

Description

The Cytoscape 'Layout' menu lists many layout algorithms, but the names presented there are different from the names by which these algorithms are known to layout method. This method returns a named list in which the names are from the GUI, and the values identify the names you must use to choose an algorithms in the programmatic interface.

Usage

getLayoutNameMapping(base.url = .defaultBaseUrl)

Arguments

base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

A named list of character strings

Author(s)

Alexander Pico, Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

getLayoutNameMapping()
# Degree Sorted Circle Layout    Group Attributes Layout    Edge-weighted Spring Embedded Layout 
#              "degree-circle"       "attributes-layout"                          "kamada-kawai"

RCy3

Functions to Access and Control Cytoscape

v2.10.2

MIT + file LICENSE

Authors

Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]

Initial release

2020-11-18