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Documentation
R
RCy3

importNetworkFromNDEx

Import Network From NDEx

Description

Import a network from the NDEx database into Cytoscape.

Usage

importNetworkFromNDEx(
  ndex.id,
  username = NULL,
  password = NULL,
  accessKey = NULL,
  base.url = .defaultBaseUrl
)

Arguments

ndex.id

Network externalId provided by NDEx. This is not the same as a Cytoscape SUID.
username

(optional) NDEx account username; required for private content
password

(optional) NDEx account password; required for private content
accessKey

(optional) NDEx accessKey; alternate acccess to private content
base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

(integer) SUID of imported network

Examples

importNetworkFromNDEx(ndex.id)
RCy3

Functions to Access and Control Cytoscape

v2.10.2
MIT + file LICENSE
Authors
Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]
Initial release
2020-11-18

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