RCy3: updateNetworkInNDEx – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

updateNetworkInNDEx

Update Network In NDEx

Description

Update an existing network in NDEx, given a previously assoicaiated Cytoscape network, e.g., previously exported to NDEx or imported from NDEx.

Usage

updateNetworkInNDEx(
  username,
  password,
  isPublic,
  network = NULL,
  metadata = NULL,
  base.url = .defaultBaseUrl
)

Arguments

`username`	NDEx account username
`password`	NDEx account password
`isPublic`	(Boolean) Whether to make the network publicly accessible at NDEx.
`network`	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
`metadata`	(optional) A list of structured information describing the network
`base.url`	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

NDEx identifier (externalId) for the updated submission

Examples

updateNetworkInNDEx("user", "pass", TRUE)

RCy3

Functions to Access and Control Cytoscape

v2.10.2

MIT + file LICENSE

Authors

Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]

Initial release

2020-11-18