RRphylo

Example dataset

Example dataset

Example dataset

Example dataset

Example dataset

Example dataset

Phylogenetic Generalized Least Square with fossil phylogenies

Evolutionary rates computation along phylogenies

Phylogenetic Ridge Regression Methods for Comparative Studies

Run StableTraits from within R

Ontogenetic shape vectors analysis

Mapping morphological convergence on 3D surfaces

Cut the phylogeny at a given age or node

Finding distance between nodes and tips

Phylogenetic vector analysis of phenotypic change

Resolving polytomies to non-zero length branches

Upward tip or node to root path

Get sister clade

Make fossil species on a phylogeny

Matrix of branch lengths along root-to-tip paths

Matrix of branch lengths along a root-to-node path

Testing RRphylo methods overfit

Test for phylogenetic clustering

Plot RRphylo rates at a specified node

Randomization test for phylogenetic structuring in evolvability

Extracting a user-specified subset of the evo.dir results

Phylogenetic tree calibration

Searching for morphological convergence among species and clades

Locating shifts in phenotypic evolutionary rates

Searching for evolutionary trends in phenotypes and rates

Producing simulated phenotypes with trends

Find a node subtending to a clade of desired size

Test the effect of phylogenetic uncertainty on rate shifts found at a particular node

Create alternative phylogenies from a given tree

Fast addition of tips and clades on an existing tree