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BBB_PE_gt_subset

Example for "gt" format specification


Description

A dataset containing real genotypes for 1,000 SNPs. The data is available for ten individuals and the first 1,000 SNPs on chromosome 1. The data corresponds to a WGS experiment. There is one columns per individual.

Usage

BBB_PE_gt_subset

Format

A data frame with 1,000 rows and 14 variables:

chr

The chromosome number

pos

The position of the marker

allele1

The name of the first marker allele

allele2

The name of the second marker allele

id1

The genotypes for the first individuals (id1)

id2

The genotypes for the second individuals (id2)

id3, id4, id5, id6, id7, id8, id9, id10

The genotypes of the remaining individuals


RZooRoH

Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes

v0.3.0
GPL-3
Authors
Tom Druet, Naveen Kumar Kadri, Amandine Bertrand and Mathieu Gautier
Initial release

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