Computes the realized inbreeding coefficient
Computes the realized inbreeding coefficient with respect to a base population by summing the autozygosity from all HBD class with a rate lower or equal to the threshold T. This amounts to set the base population approximately 0.5*T generations ago. HBD classes with a higher rate are then no longer considered as autozygous.
cumhbd(zres, T = NULL)
zres |
The name of the zres object created by the zoorun function. |
T |
The value chosen to define the base population. When T is not provided, all HBD classes are considered to estimate the inbreeding coefficient. |
An array with the compute inbreeding coefficients for all the individuals in the analysis.
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