RefFreeEWAS: BootOneRefFreeEwasModel – R documentation

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BootOneRefFreeEwasModel

One Bootstrap sample for Reference-Free EWAS Model

Description

Bootstrap generation procedure for reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types.

Usage

BootOneRefFreeEwasModel(mod)

Arguments

mod

model object of class RefFreeEwasModel (generated with smallOutput=FALSE).

Details

Generates one bootstrapped data set for the reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. Typically not run by user.

Value

A matrix representing a bootstrap sample of an DNA methylation assay matrix.

Author(s)

E. Andres Houseman

References

Houseman EA, Molitor J, and Marsit CJ (2013), Reference-Free Cell Mixture Adjustments in Analysis of DNA Methylation Data. Currently a tech report, in revision for publication.