RefFreeCellMixArrayDevianceBoot
Vector of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions
RefFreeCellMixArrayDevianceBoot(rfArray, Y, EPSILON=1E-9, bootstrapIterations=5)
rfArray |
list of RefFreeCellMix objects (e.g. from RefFreeCellMixArray) |
Y |
Methylation matrix on which x was based |
EPSILON |
Minimum value of variance (zero variances will be reset to this value) |
bootstrapIterations |
Number of RefFreeCellMix iterations to use in bootstrap |
Vector of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions,
used to determine optimal number of cell types. This function returns one bootstrapped vector.
See RefFreeCellMixArrayDevianceBoots for more than one bootstrapped vector.
The bootstrapped deviance is based on normal distribution applied to errors of Y after accounting for cell mixture effect, Mu Omega^T.
See RefFreeCellMixArray for example.
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