MIMIC-III Tables
A collection of functions to create prearranged views of MIMIC-III patient data when supplied with database connection information and a mapping of the connected database.
mimic3_table_all_patients(table_map, db_connection) mimic3_table_admissions(table_map, db_connection, subject_id) mimic3_table_callout(table_map, db_connection, subject_id) mimic3_table_chart_events(table_map, db_connection, subject_id) mimic3_table_cpt_events(table_map, db_connection, subject_id) mimic3_table_diagnoses_icd(table_map, db_connection, subject_id) mimic3_table_drg_codes(table_map, db_connection, subject_id) mimic3_table_icu_stays(table_map, db_connection, subject_id) mimic3_table_lab_events(table_map, db_connection, subject_id) mimic3_table_microbiology_events(table_map, db_connection, subject_id) mimic3_table_note_events(table_map, db_connection, subject_id) mimic3_table_prescriptions(table_map, db_connection, subject_id) mimic3_table_procedure_events(table_map, db_connection, subject_id) mimic3_table_procedures_icd(table_map, db_connection, subject_id) mimic3_table_services(table_map, db_connection, subject_id) mimic3_table_transfers(table_map, db_connection, subject_id)
table_map |
A dplyr::tibble containing a mapping between the CDM standard tables and fields to the user connected tables and fields. |
db_connection |
A DBI::dbConnect object. |
subject_id |
A numeric, or coercible to numeric. |
A dplyr::tibble containing pre-coordinated patient information from the connected database.
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