OMOP Tables
Collection of functions to create prearranged views of OMOP patient data when supplied with database connection information and a mapping of the connected database.
omop_table_all_patients(table_map, db_connection) omop_table_condition_era(table_map, db_connection, subject_id) omop_table_condition_occurrence(table_map, db_connection, subject_id) omop_table_death(table_map, db_connection, subject_id) omop_table_device_exposure(table_map, db_connection, subject_id) omop_table_dose_era(table_map, db_connection, subject_id) omop_table_drug_era(table_map, db_connection, subject_id) omop_table_drug_exposure(table_map, db_connection, subject_id) omop_table_measurement(table_map, db_connection, subject_id) omop_table_note(table_map, db_connection, subject_id) omop_table_observation(table_map, db_connection, subject_id) omop_table_observation_period(table_map, db_connection, subject_id) omop_table_payer_plan_period(table_map, db_connection, subject_id) omop_table_procedure_occurrence(table_map, db_connection, subject_id) omop_table_specimen(table_map, db_connection, subject_id) omop_table_visit_occurrence(table_map, db_connection, subject_id)
table_map |
A dplyr::tibble containing a mapping between the CDM standard tables and fields to the user connected tables and fields. |
db_connection |
A DBI::dbConnect object |
subject_id |
A numeric, or coercible to numeric. |
A dplyr::tibble containing pre-coordinated patient information from the connected database.
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.