Rlabkey

Exchange data between LabKey Server and R

Open the Rlabkey Users Guide

Returns the folder path associated with a session

Get related data fields that are available to include in a query on a given query object

Retrieve data from LabKey Server

Returns an object representing a LabKey schema

Creates and returns a LabKey Server session

Convenience method to configure Rlabkey connections to accept self-signed certificates

Returns the current set of Curl options that are being used in the existing session

Delete rows of data from a LabKey database

Provide comparator access

Create a new LabKey domain

Create a new LabKey domain and load data

Create a conditional format data frame

Create a conditional format query filter

Helper function to create a domain design data structure

Helper function to create a domain design indices list

Delete a LabKey domain

Returns the metadata for an existing LabKey domain

Infer field metadata from a data frame

Updates an existing LabKey domain

Retrieve data from a LabKey Server using SQL commands

Constant for the Simple Derivation Protocol

Create an experiment data object

Create an experiment material object

Create an experiment run object

Saves a modified experiment batch

Saves Runs.

Get the default baseUrl parameter used for all http or https requests

Retrieve the fields of a LabKey query view

Retrieve a list of folders accessible to the current user

Retrieve detailed information on a LabKey query

Get effective module property value

Retrieve a list of available queries for a specified LabKey schema

Retrieve detailed information on a LabKey query

Retrieve a list of available named views defined on a query in a schema

Helper function to get the HTTP request options for a specific method type.

Retrieve a list of available schemas from a labkey database

Import rows of data into a LabKey Server

Insert new rows of data into a LabKey Server

Build a file path to data on a remote machine

Gets the protocol file status for a pipeline

Gets the container in which the pipeline is defined

Gets the protocols that have been saved for a particular pipeline

Start an analysis of a set of files using a pipeline

Add a step to a provenance recording

Create provenance parameter object

Start a provenance recording

Stop a provenance recording

Initialize a RStudio session for LabKey integration

Initialize a RStudio session for LabKey R report source editing

Initialize a RStudio session for LabKey integration using a time one request id

Check valid rlabkey session

Update RStudio report source back to LabKey

Save an assay batch object to a labkey database

Creates a new container, which may be a project, folder, or workbook, on the server

Deletes an existing container, which may be a project, folder, or workbook

Returns information about the specified container

Moves an existing container, which may be a folder or workbook

Retrieve data from a labkey database

Modify the current set of Curl options that are being used in the existing session

Helper function to enable/disable debug mode.

Set the default parameters used for all http or https requests

Set module property value

Assay transform script helper function to get a run property value from a data.frame

Assay transform script helper function to read a run properties file

Delete all rows from a table

Update existing rows of data in a labkey database

Deletes the provided file/folder on a LabKey Server via WebDAV

Recursively download a folder via WebDAV

Download a file via WebDAV

List the contents of a LabKey Server folder via WebDAV

Create a folder via WebDAV

Create a folder via WebDAV

Tests if a path exists on a LabKey Server via WebDAV

Upload a file via WebDAV

List the available folder paths

List the projects available at a given LabKey Server address

List the available schemas

Builds filters to be used in labkey.selectRows and getRows

Returns an object representing a LabKey schema