Reinitialize Object Indexing
Reinitialize the indexing of an object.
reindex(...) ## S3 method for class 'atoms' reindex(x, eleid = TRUE, resid = TRUE, ...) ## S3 method for class 'pdb' reindex(x, eleid = TRUE, resid = TRUE, ...)
x |
an R object. |
eleid |
a single element logical vector indicating if elements IDs have to reindexed. |
resid |
a single element logical vector indicating if residues IDs have to reindexed. |
... |
further arguments passed to or from other methods. |
reindex is a generic function to reinitialize the indexing of an object or its components.
The methods for objects of class ‘atoms’ reinitialize the residue and element IDs starting
from 1 and avoiding gaps in the indexes. For objects of class ‘pdb’ their atoms and
conect components are reindexed consistently.
Return an object of the same class as x with updated indexes.
x <- read.pdb(system.file("examples/PCBM_ODCB.pdb",package="Rpdb"))
x <- subset(x, x$atoms$eleid \%in\% sample(x$atoms$eleid, 10))
print(x)
x <- reindex(x)
print(x)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.