This package provides an interface to the 'samtools',
'bcftools', and 'tabix' utilities for manipulating SAM (Sequence
Alignment / Map), FASTA, binary variant call (BCF) and compressed
indexed tab-delimited (tabix) files.

Binary alignment (BAM), FASTA, variant call (BCF), and tabix
file import

package-ubuntu-20.04-r-4.0.5#cran#Rsamtools-2.6.0

Functions listed on this page are no longer supported.

For <code>yieldTabix</code>, use the <code>yieldSize</code> argument of
<code>TabixFiles</code>.

For <code>BamSampler</code>, use <code>REDUCEsampler</code> with
<code>reduceByYield</code> in the <code>GenomicFiles</code> package.

Martin Morgan &lt;mtmorgan@fhcrc.org&gt;.

package-ubuntu-20.04-r-4.0.5#cran#Rsamtools-2.6.0#docs#deprecated

deprecated

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Details

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Rsamtools

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