RxODE: rxTrans – R documentation

Pricing

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

Get Started for Free

Documentation

RxODE

rxTrans

Translate the model to C code if needed

Description

This function translates the model to C code, if needed

Usage

rxTrans(
  model,
  modelPrefix = "",
  md5 = "",
  modName = NULL,
  modVars = FALSE,
  ...
)

## Default S3 method:
rxTrans(
  model,
  modelPrefix = "",
  md5 = "",
  modName = NULL,
  modVars = FALSE,
  ...
)

## S3 method for class 'character'
rxTrans(
  model,
  modelPrefix = "",
  md5 = "",
  modName = NULL,
  modVars = FALSE,
  ...
)

Arguments

`model`	This is the ODE model specification. It can be: a string containing the set of ordinary differential equations (ODE) and other expressions defining the changes in the dynamic system. a file name where the ODE system equation is contained An ODE expression enclosed in `\{\}` (see also the `filename` argument). For details, see the sections “Details” and `RxODE Syntax` below.
`modelPrefix`	Prefix of the model functions that will be compiled to make sure that multiple RxODE objects can coexist in the same R session.
`md5`	Is the md5 of the model before parsing, and is used to embed the md5 into DLL, and then provide for functions like `rxModelVars()`.
`modName`	a string to be used as the model name. This string is used for naming various aspects of the computations, including generating C symbol names, dynamic libraries, etc. Therefore, it is necessary that `modName` consists of simple ASCII alphanumeric characters starting with a letter.
`modVars`	returns the model variables instead of the named vector of translated properties.
`...`	Ignored parameters.

Value

a named vector of translated model properties including what type of jacobian is specified, the C function prefixes, as well as the C functions names to be called through the compiled model.

Author(s)

Matthew L.Fidler

Matthew L. Fidler [aut] (<https://orcid.org/0000-0001-8538-6691>), Melissa Hallow [aut], Wenping Wang [aut, cre], Zufar Mulyukov [ctb], Alan Hindmarsh [ctb], Awad H. Al-Mohy [ctb], Matt Dowle [ctb], Cleve Moler [ctb], David Cooley [ctb], Drew Schmidt [ctb], Arun Srinivasan [ctb], Ernst Hairer [ctb], Gerhard Wanner [ctb], Goro Fuji [ctb], Hadley Wickham [ctb], Jack Dongarra [ctb], Linda Petzold [ctb], Martin Maechler [ctb], Matteo Fasiolo [ctb], Morwenn [ctb], Nicholas J. Higham [ctb], Roger B. Sidje [ctb], Simon Frost [ctb], Kevin Ushey [ctb], Yu Feng [ctb]

Initial release