collect function
Collects all outputs saved at the provided saveAt parameter from the SSI analysis when testing data was splited
according to argument subset.
collect(prefix = "")
prefix |
(character) Prefix that was added to the output files name, this may include a path |
An object of the class 'SSI' for which methods fitted, plot and summary exist
Marco Lopez-Cruz (maraloc@gmail.com) and Gustavo de los Campos
require(SFSI) data(wheatHTP) X = scale(X[1:300,])/sqrt(ncol(X)) # Subset and scale markers G = tcrossprod(X) # Genomic relationship matrix y = as.vector(scale(Y[1:300,"YLD"])) # Subset response variable prefix <- paste0(tempdir(),"/testSSI") # Run the analysis into 4 subsets and save them at a given prefix fm <- SSI(y,K=G,tst=1:100,trn=101:length(y),subset=c(1,4),saveAt=prefix) fm <- SSI(y,K=G,tst=1:100,trn=101:length(y),subset=c(2,4),saveAt=prefix) fm <- SSI(y,K=G,tst=1:100,trn=101:length(y),subset=c(3,4),saveAt=prefix) fm <- SSI(y,K=G,tst=1:100,trn=101:length(y),subset=c(4,4),saveAt=prefix) # Collect all results after completion fm <- collect(prefix)
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