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R
Seurat

AnnotateAnchors

Add info to anchor matrix

Description

Add info to anchor matrix

Usage

AnnotateAnchors(anchors, vars, slot, ...)

## Default S3 method:
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  object.list,
  assay = NULL,
  ...
)

## S3 method for class 'IntegrationAnchorSet'
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  object.list = NULL,
  assay = NULL,
  ...
)

## S3 method for class 'TransferAnchorSet'
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  reference = NULL,
  query = NULL,
  assay = NULL,
  ...
)

Arguments

anchors

An AnchorSet object
vars

Variables to pull for each object via FetchData
slot

Slot to pull feature data for
...

Arguments passed to other methods
object.list

List of Seurat objects
assay

Specify the Assay per object if annotating with expression data
reference

Reference object used in FindTransferAnchors
query

Query object used in FindTransferAnchors

Value

Returns the anchor dataframe with additional columns for annotation metadata

Seurat

Tools for Single Cell Genomics

v4.0.1
GPL-3 | file LICENSE
Authors
Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>), Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>), Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>), Jeff Farrell [ctb], Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>), Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>), Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>), Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>), Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>), Patrick Roelli [ctb], Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>), Karthik Shekhar [ctb], Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>), Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>), Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>), Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>), Satija Lab and Collaborators [fnd]
Initial release
2021-03-17

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