Seurat: DiscretePalette – R documentation

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DiscretePalette

Discrete colour palettes from the pals package

Description

These are included here because pals depends on a number of compiled packages, and this can lead to increases in run time for Travis, and generally should be avoided when possible.

Usage

DiscretePalette(n, palette = NULL)

Arguments

`n`	Number of colours to be generated.
`palette`	Options are "alphabet", "alphabet2", "glasbey", "polychrome", and "stepped". Can be omitted and the function will use the one based on the requested n.

Details

These palettes are a much better default for data with many classes than the default ggplot2 palette.

Many thanks to Kevin Wright for writing the pals package.

Taken from the pals package (Licence: GPL-3). https://cran.r-project.org/package=pals Credit: Kevin Wright

Value

A vector of colors

Seurat

Tools for Single Cell Genomics

v4.0.1

GPL-3 | file LICENSE

Authors

Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>), Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>), Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>), Jeff Farrell [ctb], Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>), Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>), Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>), Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>), Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>), Patrick Roelli [ctb], Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>), Karthik Shekhar [ctb], Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>), Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>), Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>), Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>), Satija Lab and Collaborators [fnd]

Initial release

2021-03-17