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SCTResults

Get SCT results from an Assay

Description

Pull the SCTResults information from an SCTAssay object.

Usage

SCTResults(object, ...)

SCTResults(object, ...) <- value

## S3 method for class 'SCTModel'
SCTResults(object, slot, ...)

## S3 replacement method for class 'SCTModel'
SCTResults(object, slot, ...) <- value

## S3 method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...)

## S3 replacement method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...) <- value

## S3 method for class 'Seurat'
SCTResults(object, assay = "SCT", slot, model = NULL, ...)

Arguments

object

An object
...

Arguments passed to other methods (not used)
value

new data to set
slot

Which slot to pull the SCT results from
model

Name of SCModel to pull result from. Available names can be retrieved with levels.
assay

Assay in the Seurat object to pull from

Value

Returns the value present in the requested slot for the requested group. If group is not specified, returns a list of slot results for each group unless there is only one group present (in which case it just returns the slot directly).

Seurat

Tools for Single Cell Genomics

v4.0.1
GPL-3 | file LICENSE
Authors
Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>), Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>), Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>), Jeff Farrell [ctb], Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>), Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>), Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>), Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>), Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>), Patrick Roelli [ctb], Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>), Karthik Shekhar [ctb], Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>), Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>), Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>), Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>), Satija Lab and Collaborators [fnd]
Initial release
2021-03-17

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