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Documentation
R
Seurat

VariableFeaturePlot

View variable features

Description

View variable features

Usage

VariableFeaturePlot(
  object,
  cols = c("black", "red"),
  pt.size = 1,
  log = NULL,
  selection.method = NULL,
  assay = NULL,
  raster = NULL
)

Arguments

object

Seurat object
cols

Colors to specify non-variable/variable status
pt.size

Size of the points on the plot
log

Plot the x-axis in log scale
selection.method

Which method to pull. For HVFInfo and VariableFeatures, choose one from one of the following:

  • “vst”

  • “sctransform” or “sct”

  • “mean.var.plot”, “dispersion”, “mvp”, or “disp”

For SVFInfo and SpatiallyVariableFeatures, choose from:

  • “markvariogram”

  • “moransi”

assay

Assay to pull variable features from
raster

Convert points to raster format, default is NULL which will automatically use raster if the number of points plotted is greater than 100,000

Value

A ggplot object

See Also

Examples

data("pbmc_small")
VariableFeaturePlot(object = pbmc_small)
Seurat

Tools for Single Cell Genomics

v4.0.1
GPL-3 | file LICENSE
Authors
Andrew Butler [ctb] (<https://orcid.org/0000-0003-3608-0463>), Saket Choudhary [ctb] (<https://orcid.org/0000-0001-5202-7633>), Charlotte Darby [ctb] (<https://orcid.org/0000-0003-2195-5300>), Jeff Farrell [ctb], Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>), Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>), Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>), Jaison Jain [ctb] (<https://orcid.org/0000-0002-9478-5018>), Efthymia Papalexi [ctb] (<https://orcid.org/0000-0001-5898-694X>), Patrick Roelli [ctb], Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>), Karthik Shekhar [ctb], Avi Srivastava [ctb] (<https://orcid.org/0000-0001-9798-2079>), Tim Stuart [ctb] (<https://orcid.org/0000-0002-3044-0897>), Kristof Torkenczy [ctb] (<https://orcid.org/0000-0002-4869-7957>), Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>), Satija Lab and Collaborators [fnd]
Initial release
2021-03-17

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