Default Assay
Get and set the default assay
DefaultAssay(object, ...) DefaultAssay(object, ...) <- value ## S3 method for class 'Assay' DefaultAssay(object, ...) ## S3 replacement method for class 'Assay' DefaultAssay(object, ...) <- value ## S3 method for class 'SeuratCommand' DefaultAssay(object, ...) ## S3 method for class 'DimReduc' DefaultAssay(object, ...) ## S3 replacement method for class 'DimReduc' DefaultAssay(object, ...) <- value ## S3 method for class 'Graph' DefaultAssay(object, ...) ## S3 replacement method for class 'Graph' DefaultAssay(object, ...) <- value ## S3 method for class 'Seurat' DefaultAssay(object, ...) ## S3 replacement method for class 'Seurat' DefaultAssay(object, ...) <- value
object |
An object |
... |
Arguments passed to other methods |
value |
Name of assay to set as default |
DefaultAssay: The name of the default assay
DefaultAssay<-: An object with the default assay updated
# Get current default assay DefaultAssay(object = pbmc_small) # Create dummy new assay to demo switching default assays new.assay <- pbmc_small[["RNA"]] Key(object = new.assay) <- "RNA2_" pbmc_small[["RNA2"]] <- new.assay # switch default assay to RNA2 DefaultAssay(object = pbmc_small) <- "RNA2" DefaultAssay(object = pbmc_small)
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