Get Cell Embeddings
Get Cell Embeddings
Embeddings(object, ...) ## S3 method for class 'DimReduc' Embeddings(object, ...) ## S3 method for class 'Seurat' Embeddings(object, reduction = "pca", ...)
object |
An object |
... |
Arguments passed to other methods |
reduction |
Name of reduction to pull cell embeddings for |
The embeddings matrix
# Get the embeddings directly from a DimReduc object Embeddings(object = pbmc_small[["pca"]])[1:5, 1:5] # Get the embeddings from a specific DimReduc in a Seurat object Embeddings(object = pbmc_small, reduction = "pca")[1:5, 1:5]
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