FASTQ input and manipulation.
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
See packageDescription('ShortRead')
Maintainer: Martin Morgan <mtmorgan@fhcrc.org>
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