(Legacy) Construct objects of class "SolexaIntensity" and "SolexaIntensityInfo"
These function constructs objects of
SolexaIntensity and
SolexaIntensityInfo. It will often be more
convenient to create these objects using parsers such as
readIntensities.
SolexaIntensity(intensity=array(0, c(0, 0, 0)),
measurementError=array(0, c(0, 0, 0)),
readInfo=SolexaIntensityInfo(
lane=integer(nrow(intensity))),
...)
SolexaIntensityInfo(lane=integer(0),
tile=integer(0)[seq_along(lane)],
x=integer(0)[seq_along(lane)],
y=integer(0)[seq_along(lane)])intensity |
A matrix of image intensity values. Successive
columns correspond to nucleotides A, C, G, T; four successive
columns correspond to each cycle. Typically, derived from
|
measurementError |
As |
readInfo |
An object of class |
lane |
An integer vector giving the lane from which each read is derived. |
tile |
An integer vector giving the tile from which each read is derived. |
x |
An integer vector giving the tile-local x coordinate of the read from which each read is derived. |
y |
An integer vector giving the tile-local y coordinate of the read from which each read is derived. |
... |
Additional arguments, not currently used. |
An object of class SolexaIntensity, or
SolexaIntensityInfo.
Martin Morgan <mtmorgan@fhcrc.org>
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