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R
Signac

AccessiblePeaks

Accessible peaks

Description

Find accessible peaks in a set of cells

Usage

AccessiblePeaks(
  object,
  assay = NULL,
  idents = NULL,
  cells = NULL,
  min.cells = 10
)

Arguments

object

A Seurat object
assay

Name of assay to use
idents

A set of identity classes to find accessible peaks for
cells

A vector of cells to find accessible peaks for
min.cells

Minimum number of cells with the peak accessible (>0 counts) for the peak to be called accessible

Value

Returns a vector of peak names

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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