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R
Signac

ClosestFeature

Closest Feature

Description

Find the closest feature to a given set of genomic regions

Usage

ClosestFeature(object, regions, annotation = NULL, ...)

Arguments

object

A Seurat object
regions

A set of genomic regions to query
annotation

A GRanges object containing annotation information. If NULL, use the annotations stored in the object.
...

Additional arguments passed to StringToGRanges

Value

Returns a dataframe with the name of each region, the closest feature in the annotation, and the distance to the feature.

Examples

ClosestFeature(
  object = atac_small,
  regions = head(granges(atac_small))
)
Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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