Signac: ConvertMotifID – R documentation

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ConvertMotifID

Convert between motif name and motif ID

Description

Converts from motif name to motif ID or vice versa. To convert common names to IDs, use the name parameter. To convert IDs to common names, use the id parameter.

Usage

ConvertMotifID(object, ...)

## Default S3 method:
ConvertMotifID(object, name, id, ...)

## S3 method for class 'Motif'
ConvertMotifID(object, ...)

## S3 method for class 'ChromatinAssay'
ConvertMotifID(object, ...)

## S3 method for class 'Seurat'
ConvertMotifID(object, assay = NULL, ...)

Arguments

`object`	A Seurat, ChromatinAssay, or Motif object
`...`	Arguments passed to other methods
`name`	A vector of motif names
`id`	A vector of motif IDs. Only one of `name` and `id` should be supplied
`assay`	For `Seurat` object. Name of assay to use. If NULL, use the default assay

Value

Returns a character vector with the same length and order as the input. Any names or IDs that were not found will be stored as NA.

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11