Count fragments
Count total fragments per cell barcode present in a fragment file.
CountFragments(fragments, cells = NULL, max_lines = NULL, verbose = TRUE)
fragments |
Path to a fragment file |
cells |
Cells to include. If NULL, include all cells |
max_lines |
Maximum number of lines to read from the fragment file. If NULL, read all lines in the file. |
verbose |
Display messages |
Returns a data.frame
fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
counts <- CountFragments(fragments = fpath)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.