Signac: CoverageBrowser – R documentation

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CoverageBrowser

Genome browser

Description

Interactive version of the CoveragePlot function. Allows altering the genome position interactively. The current view at any time can be saved to a list of ggplot objects using the "Save plot" button, and this list of plots will be returned after ending the browser by pressing the "Done" button.

Usage

CoverageBrowser(object, region, assay = NULL, sep = c("-", "-"), ...)

Arguments

`object`	A Seurat object
`region`	A set of genomic coordinates
`assay`	Name of assay to use
`sep`	Separators for genomic coordinates if region supplied as a string rather than GRanges object
`...`	Parameters passed to `CoveragePlot`

Value

Returns a list of ggplot objects

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11