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DepthCor

Plot sequencing depth correlation

Description

Compute the correlation between total counts and each reduced dimension component.

Usage

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object

A Seurat object
assay

Name of assay to use for sequencing depth. If NULL, use the default assay.
reduction

Name of a dimension reduction stored in the input object
n

Number of components to use. If NULL, use all components.
...

Additional arguments passed to cor

Value

Returns a ggplot object

Examples

DepthCor(object = atac_small)
Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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