Calculate fraction of reads in peaks per cell
Calculate fraction of reads in peaks per cell
FRiP(object, assay, total.fragments, col.name = "FRiP", verbose = TRUE)
object |
A Seurat object |
assay |
Name of the assay containing a peak x cell matrix |
total.fragments |
Name of a metadata column containing the total number
of sequenced fragments for each cell. This can be computed using the
|
col.name |
Name of column in metadata to store the FRiP information. |
verbose |
Display messages |
Returns a Seurat object
FRiP(object = atac_small, assay = 'peaks', total.fragments = "fragments")
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