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R
Signac

FractionCountsInRegion

Fraction of counts in a genomic region

Description

Find the fraction of counts per cell that overlap a given set of genomic ranges

Usage

FractionCountsInRegion(object, regions, assay = NULL, ...)

Arguments

object

A Seurat object
regions

A GRanges object containing a set of genomic regions
assay

Name of assay to use
...

Additional arguments passed to CountsInRegion

Value

Returns a numeric vector

Examples

FractionCountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)
Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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