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Documentation
R
Signac

GetCellsInRegion

Get cells in a region

Description

Extract cell names containing reads mapped within a given genomic region

Usage

GetCellsInRegion(tabix, region, cells = NULL)

Arguments

tabix

Tabix object
region

A string giving the region to extract from the fragments file
cells

Vector of cells to include in output. If NULL, include all cells

Value

Returns a list

Examples

fpath <- system.file("extdata", "fragments.tsv.gz", package="Signac")
GetCellsInRegion(tabix = fpath, region = "chr1-10245-762629")
Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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