Extract genomic ranges from EnsDb object
Pulls the transcript information for all chromosomes from an EnsDb object.
This wraps crunch and applies the extractor
function to all chromosomes present in the EnsDb object.
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)ensdb |
An EnsDb object |
standard.chromosomes |
Keep only standard chromosomes |
biotypes |
Biotypes to keep |
verbose |
Display messages |
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