Retrieve a motif matrix
Get motif matrix for given assay
GetMotifData(object, ...) ## S3 method for class 'Motif' GetMotifData(object, slot = "data", ...) ## S3 method for class 'ChromatinAssay' GetMotifData(object, slot = "data", ...) ## S3 method for class 'Seurat' GetMotifData(object, assay = NULL, slot = "data", ...)
object |
A Seurat object |
... |
Arguments passed to other methods |
slot |
Information to pull from object (data, pwm, meta.data) |
assay |
Which assay to use. Default is the current active assay |
Returns a Seurat object
motif.obj <- Seurat::GetAssayData( object = atac_small[['peaks']], slot = "motifs" ) GetMotifData(object = motif.obj) GetMotifData(object = atac_small)
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