Signac: GetTSSPositions – R documentation

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GetTSSPositions

Find transcriptional start sites

Description

Get the TSS positions from a set of genomic ranges containing gene positions. Ranges can contain exons, introns, UTRs, etc, rather than the whole transcript. Only protein coding gene biotypes are included in output.

Usage

GetTSSPositions(ranges, biotypes = "protein_coding")

Arguments

`ranges`	A GRanges object containing gene annotations.
`biotypes`	Gene biotypes to include. If NULL, use all biotypes in the supplied gene annotation.

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11

GetTSSPositions

Description

Usage

Arguments

Signac

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