Set motif data
Set motif matrix for given assay
SetMotifData(object, ...) ## S3 method for class 'Motif' SetMotifData(object, slot, new.data, ...) ## S3 method for class 'ChromatinAssay' SetMotifData(object, slot, new.data, ...) ## S3 method for class 'Seurat' SetMotifData(object, assay = NULL, ...)
object |
A Seurat object |
... |
Arguments passed to other methods |
slot |
Name of slot to use |
new.data |
motif matrix to add. Should be matrix or sparse matrix class |
assay |
Name of assay whose data should be set |
Returns a Seurat object
motif.obj <- Seurat::GetAssayData( object = atac_small[['peaks']], slot = "motifs" ) SetMotifData(object = motif.obj, slot = 'data', new.data = matrix()) SetMotifData( object = atac_small[['peaks']], slot = 'data', new.data = matrix() ) motif.matrix <- GetMotifData(object = atac_small) SetMotifData( object = atac_small, assay = 'peaks', slot = 'data', new.data = motif.matrix )
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