Signac: TSSPlot – R documentation

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TSSPlot

Plot signal enrichment around TSSs

Description

Plot the normalized TSS enrichment score at each position relative to the TSS. Requires that TSSEnrichment has already been run on the assay.

Usage

TSSPlot(object, assay = NULL, group.by = NULL, idents = NULL)

Arguments

`object`	A Seurat object
`assay`	Name of the assay to use. Should have the TSS enrichment information for each cell already computed by running `TSSEnrichment`
`group.by`	Set of identities to group cells by
`idents`	Set of identities to include in the plot

Value

Returns a ggplot2 object

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11