Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

VariantPlot

Plot strand concordance vs. VMR

Description

Plot the Pearson correlation between allele frequencies on each strand versus the log10 mean-variance ratio for the allele.

Usage

VariantPlot(
  variants,
  min.cells = 2,
  concordance.threshold = 0.65,
  vmr.threshold = 0.01
)

Arguments

variants

A dataframe containing variant information. This should be computed using IdentifyVariants
min.cells

Minimum number of high-confidence cells detected with the variant for the variant to be displayed.
concordance.threshold

Strand concordance threshold
vmr.threshold

Mean-variance ratio threshold
Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.