Signac: as.ChromatinAssay – R documentation

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Signac

as.ChromatinAssay

Convert objects to a ChromatinAssay

Description

Convert objects to a ChromatinAssay

Usage

as.ChromatinAssay(x, ...)

## S3 method for class 'Assay'
as.ChromatinAssay(
  x,
  ranges = NULL,
  seqinfo = NULL,
  annotation = NULL,
  motifs = NULL,
  fragments = NULL,
  bias = NULL,
  positionEnrichment = NULL,
  sep = c("-", "-"),
  ...
)

Arguments

`x`	An object to convert to class `ChromatinAssay`
`...`	Arguments passed to other methods
`ranges`	A GRanges object
`seqinfo`	A `Seqinfo` object containing basic information about the genome used. Alternatively, the name of a UCSC genome can be provided and the sequence information will be downloaded from UCSC.
`annotation`	Genomic annotation
`motifs`	A `Motif` object
`fragments`	A list of `Fragment` objects
`bias`	Tn5 integration bias matrix
`positionEnrichment`	A named list of position enrichment matrices.
`sep`	Characters used to separate the chromosome, start, and end coordinates in the row names of the data matrix

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11

as.ChromatinAssay

Description

Usage

Arguments

Signac

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