Signac: atac_small – R documentation

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atac_small

A small example scATAC-seq dataset

Description

A subsetted version of 10x Genomics 10k human (hg19) PBMC scATAC-seq dataset

Usage

atac_small

Format

A Seurat object with the following assays

peaks: A peak x cell dataset
bins: A 5 kb genome bin x cell dataset
RNA: A gene x cell dataset

Source

https://support.10xgenomics.com/single-cell-atac/datasets/1.1.0/atac_v1_pbmc_10k

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1

MIT + file LICENSE

Authors

Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)

Initial release

2021-05-11