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Signac

coverage-ChromatinAssay-method

Coverage of a ChromatinAssay object

Description

This is the coverage method for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

## S4 method for signature 'Seurat'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x

A ChromatinAssay object
shift

How much each range should be shifted before coverage is computed. See coverage in the IRanges package.
width

Specifies the length of the returned coverage vectors. See coverage in the IRanges package.
weight

Assigns weight to each range in x. See coverage in the IRanges package.
method

See coverage in the IRanges package

Functions

  • coverage,ChromatinAssay-method: method for ChromatinAssay objects

  • coverage,Seurat-method: method for Seurat objects

See Also

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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