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granges-methods

Access genomic ranges for ChromatinAssay objects


Description

Methods for accessing GRanges object information stored in a ChromatinAssay object.

Usage

## S4 method for signature 'ChromatinAssay'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

## S4 method for signature 'Seurat'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

Arguments

x

A ChromatinAssay object

use.names

Whether the names on the genomic ranges should be propagated to the returned object.

use.mcols

Not supported for ChromatinAssay objects

...

Additional arguments

Value

Returns a GRanges object

Functions

  • granges,Seurat-method: method for Seurat objects

See Also

Examples

granges(atac_small)

Signac

Analysis of Single-Cell Chromatin Data

v1.2.1
MIT + file LICENSE
Authors
Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>), Avi Srivastava [aut] (<https://orcid.org/0000-0001-9798-2079>), Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>), Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Initial release
2021-05-11

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